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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22002278_22014300_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22002278 - 22014300
Intron Length:
12023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTTTGTTACTC
Flanking Amino Acid:
FKTPYVSKGTDYCSVVTLVD
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82
0.72
0.9
75.8
37.8
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
48.8
-0.1
2.2
66
40.4

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339