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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22014432_22024618_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22014432 - 22024618
Intron Length:
10187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TGAATTATGACC
Flanking Amino Acid:
GDIVRFHRIKIREYNGQMQG
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
47.1
-0.2
1.6
56.37
35.6

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339