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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22042860_22045683_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22042860 - 22045683
Intron Length:
2824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAA
U12 Branch Point Sequence:
CTGTTTTTAATA
Flanking Amino Acid:
YPEDTLLMIEGGTSKEIWKL
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
58.2
0.21
1.1
55.4
40.4
Major PPT
75.9
0.58
0.9
73.3
35.9
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
68.5
0.58
1.2
69.78
37.7

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339