About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22045820_22047518_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22045820 - 22047518
Intron Length:
1699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTAAATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTGTTTTAAAT
Flanking Amino Acid:
FLLQGKVKYYGCKQCSTPKP
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
71.1
37.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.8
0.38
1.1
60.4
44.7
Minor 5ss
37.7
-1.4
3.1
39.8
46.2
Minor BPS
62
0.45
1.5
75.95
41.3

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339