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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22047614_22049127_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22047614 - 22049127
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TATTCACCACAT
Flanking Amino Acid:
PSWEPTEIAQVLGIEPLQYV
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
65.9
42.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
38.6
-1.3
2.9
48.1
47.4
Minor BPS
41.1
-0.6
2.3
65.35
44.1

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339