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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22049220_22052591_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22049220 - 22052591
Intron Length:
3372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCTTCCAACACT
Flanking Amino Acid:
GALNAYLFDYEKFFQIPASE
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
49
0
2.3
76.44
46

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339