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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22052698_22053688_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22052698 - 22053688
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGATTG
5'SS Class:
major
3'SS Sequence:
TTTTGATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTAATATTAAAT
Flanking Amino Acid:
NTLCPPGRKLDDLPWLECFI
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1.1
73.6
37.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.9
0.74
0.8
78.1
35.3
Minor 5ss
37.9
-1.4
3
47.9
47.7
Minor BPS
57
0.3
1.7
76.28
39.4

Associated Gene:

Gene:
POT1
Ensembl Gene ID:
ENSAPLG00000016011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016726
21980581 - 22053919
73339