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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2208100_2210229_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2208100 - 2210229
Intron Length:
2130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTACGTTGG
5'SS Class:
weak_major
3'SS Sequence:
TCTCCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CACTCTTTATCT
Flanking Amino Acid:
FVFYNCSVHNSCLSCVESPY
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.4
53.5
46
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.8
0.72
0.7
73.2
31.7
Minor 5ss
40.1
-1.1
3
49.1
41.9
Minor BPS
61.4
0.44
1.6
72.42
44.8

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544