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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22100287_22111473_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22100287 - 22111473
Intron Length:
11187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CCTGCATTAAAT
Flanking Amino Acid:
FSCKIVPYIEVASLGVTTFT
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
53.5
0.19
1.9
70.06
46.5

Associated Gene:

Gene:
GPR37
Ensembl Gene ID:
ENSAPLG00000015956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016642
22099633 - 22112856
13224