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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22206737_22224047_R

Intron Information:

Intron Rank:
136855
Intron Class:
major
Intron Phase:
Intron Coordinates:
22206737 - 22224047
Intron Length:
17311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
77.6
0.62
0.7
73.5
24.6
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017542
22195673 - 22236493
40821