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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22220943_22224047_R

Intron Information:

Intron Rank:
136857
Intron Class:
major
Intron Phase:
Intron Coordinates:
22220943 - 22224047
Intron Length:
3105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACCATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.5
0.71
0.8
74
35.6
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
51.8
0.14
1.7
68.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029995
22220824 - 22236237
15414