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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2225066_2233026_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2225066 - 2233026
Intron Length:
7961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
CTCCCACTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
SSSVQCQNTSYSYEGMEINS
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.6
37
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.2
0.48
0.8
62.1
33.6
Minor 5ss
33.7
-1.9
2.9
40.3
45.6
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544