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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2233124_2235585_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2233124 - 2235585
Intron Length:
2462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTATCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CTTTTCCTATCC
Flanking Amino Acid:
FNIDNPAQNKVHLYKCGAMR
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
72
0.49
0.8
64.8
30.7
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
54.1
0.11
2
70.36
41.2

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544