About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22353974_22356990_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22353974 - 22356990
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
SISCKEKDNIDITLQWLIQH
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.5
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
73.4
0.53
1
69.4
36.8
Minor 5ss
48.9
-0.1
2.8
68.8
42.1
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015872
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016560
22353924 - 22380840
26917