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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22353974_22358978_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22353974 - 22358978
Intron Length:
5005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTGTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
ALDEKQLIEKLHNIAMAYSA
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
73.4
0.53
1
69.4
36.8
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015872
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026657
22353910 - 22380840
26931