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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2235777_2241457_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2235777 - 2241457
Intron Length:
5681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTTCTTGACT
Flanking Amino Acid:
GKCTNPKITDINPVTGPREG
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
84.9
0.79
0.8
77
37.3
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
82.6
1.11
1
91.78
30.6

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544