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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22391759_22393562_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22391759 - 22393562
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
GCTCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
CTGCACTAAACT
Flanking Amino Acid:
WGDLNLTQSKNTCKTLDNYL
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
61.5
44.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
85
0.79
0.8
79.1
32.9
Minor 5ss
43.3
-0.7
2.9
55.3
48.9
Minor BPS
51.5
0.12
1.9
70.21
46.3

Associated Gene:

Gene:
SPAM1
Ensembl Gene ID:
ENSAPLG00000015825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016497
22391108 - 22396795
5688