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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22393653_22395605_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22393653 - 22395605
Intron Length:
1953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CATTCACTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TCCACATTCACT
Flanking Amino Acid:
TDVYEEYLSQDDLVNTIGES
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
74
0.54
0.9
70.2
35
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
49.4
0.03
2.1
69.55
46.9

Associated Gene:

Gene:
SPAM1
Ensembl Gene ID:
ENSAPLG00000015825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016497
22391108 - 22396795
5688