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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2242341_2247358_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2242341 - 2247358
Intron Length:
5018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
ARSSQLYYFMTLTLSDLKPK
Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
33.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
39.3
-1.2
3
49.1
41.1
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544