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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22443579_22445330_R

Intron Information:

Intron Rank:
149886
Intron Class:
major
Intron Phase:
Intron Coordinates:
22443579 - 22445330
Intron Length:
1752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATGTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.6
0.8
0.8
80
37.3
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
55
0.15
2.1
71.7
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043885
22439322 - 22445571
6250