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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22443579_22454139_R

Intron Information:

Intron Rank:
149884
Intron Class:
major
Intron Phase:
Intron Coordinates:
22443579 - 22454139
Intron Length:
10561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAATGTA
5'SS Class:
major
3'SS Sequence:
TTATGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATGTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
73.7
30.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.6
0.8
0.8
80
37.3
Minor 5ss
31.9
-2.1
3.4
39.6
40.7
Minor BPS
55
0.15
2.1
71.7
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041925
22439322 - 22454392
15071