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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22457036_22458187_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22457036 - 22458187
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTCCT
5'SS Class:
major
3'SS Sequence:
TTATTTCCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAACG
Flanking Amino Acid:
WGSMQYASSKESCSTVKRYI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
66.3
45.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
82.2
0.72
0.7
77.7
31
Minor 5ss
41
-1
3.2
59.8
44.7
Minor BPS
58.9
0.14
2.1
70.02
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015709
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046038
22456607 - 22465188
8582