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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22458278_22464269_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22458278 - 22464269
Intron Length:
5992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTTTTTTGACT
Flanking Amino Acid:
YAYTFHVLTETDLVNTIGES
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
88.3
0.86
0.7
83.5
24.7
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
76.2
0.9
1.1
87.13
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015709
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016377
22456607 - 22467034
10428