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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22458350_22464377_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22458350 - 22464377
Intron Length:
6028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTAAGGAG
5'SS Class:
weak_major
3'SS Sequence:
GCCTGTATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TCTCCTCTAAGG
Flanking Amino Acid:
PNALKFVHYRCFLKLFLVLG
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.3
49.3
41.4
Major BPS
68
0.45
1
57.8
39
Major PPT
63.2
0.3
0.9
54.2
40.2
Minor 5ss
23.8
-3
3.2
21.4
37.6
Minor BPS
47.9
-0.3
2
57.09
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015709
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046038
22456607 - 22465188
8582