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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22465190_22467014_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22465190 - 22467014
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATTATAT
5'SS Class:
weak_major
3'SS Sequence:
GAAAACAGCGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
CACACCATAACA
Flanking Amino Acid:
MTGREILMDLWIKWLA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.5
0.08
1.1
56.5
36.8
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
48.3
-0.1
1.1
36.5
39.5
Minor 5ss
48.7
-0.1
2.9
74.4
41.8
Minor BPS
55
0.15
1.7
62.39
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015709
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016377
22456607 - 22467034
10428