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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22527152_22531758_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22527152 - 22531758
Intron Length:
4607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TCTTTTTCAACA
Flanking Amino Acid:
DLLGRRQRKSEKRRDPPNGP
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
83.9
0.76
0.8
81.1
29.5
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
66.6
0.52
1.5
74.67
37.4

Associated Gene:

Gene:
WASL
Ensembl Gene ID:
ENSAPLG00000015306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031892
22499983 - 22546737
46755
ENSAPLT00000015982
22499983 - 22546737
46755