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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22531783_22536878_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22531783 - 22536878
Intron Length:
5096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTCTTTTATC
Flanking Amino Acid:
KSEKRRDPPNGPNLPMATVD
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.3
0.79
0.8
80.8
31
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
66.6
0.51
1.6
75.02
35.7

Associated Gene:

Gene:
WASL
Ensembl Gene ID:
ENSAPLG00000015306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031892
22499983 - 22546737
46755
ENSAPLT00000015982
22499983 - 22546737
46755