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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22540316_22544130_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22540316 - 22544130
Intron Length:
3815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CATCATTTAACT
Flanking Amino Acid:
EAVKNELRRQAPPPPPPCRG
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.2
39.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
63.2
0.49
1.5
75.69
40.6

Associated Gene:

Gene:
WASL
Ensembl Gene ID:
ENSAPLG00000015306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015982
22499983 - 22546737
46755