About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22545289_22546675_F


Intron Information:

Intron Rank:
10

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
22545289 - 22546675

Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTTAGCCCG

5'SS Class:
major

3'SS Sequence:
TCCTGTTTTTTAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TATTAAT

U12 Branch Point Sequence:
CATGCAATGACT

Flanking Amino Acid:
QKRSKAIHSSDEDEDEDDEE

Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.8
0.56
1.2
58.3
46.2

Major BPS
91.8
1.04
0.7
90.2
19.3

Major PPT
81.6
0.71
0.8
80.2
31.9

Minor 5ss
34.5
-1.8
2.8
40.6
45.2

Minor BPS
46.9
-0.1
2
66.3
44.1

Associated Gene:

Gene:
WASL

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22499983 - 22546737
46755

22499983 - 22546737
46755