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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22566052_22566390_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22566052 - 22566390
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TCAAATGTAATG
Flanking Amino Acid:
RASSIKQLRRVEVPEALR*
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
42.2
-0.7
2.1
45.31
41.5

Associated Gene:

Gene:
LMOD2
Ensembl Gene ID:
ENSAPLG00000015178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015814
22566025 - 22571936
5912