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Intron Name: Anas_platyrhynchos_platyrhynchos_1_2257118_2257925_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2257118 - 2257925

Intron Length:

808

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTATCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TCTTTTCTATCC

Flanking Amino Acid:

LKPGSPIILKGKNLIPPVAG

Intron Amino Acid Position:

1163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

41.6

Major BPS

73.8

0.59

1.3

72.8

Major PPT

84.5

0.78

0.8

77.5

35.9

Minor 5ss

30.7

-2.2

3.2

37.8

47.1

Minor BPS

49.8

-0

1.9

65.93

40.3

Associated Gene:

Gene:

PLXNA4

Ensembl Gene ID:

ENSAPLG00000016282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017012

1929223 - 2304766

375544