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Intron Name: Anas_platyrhynchos_platyrhynchos_1_2258073_2263201_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2258073 - 2263201

Intron Length:

5129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

GCCTTCCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

GGATTTTCAACA

Flanking Amino Acid:

PNLIGRHKVMARVGGMEFSP

Intron Amino Acid Position:

1212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

71.3

0.48

0.8

62.3

34.8

Minor 5ss

34.5

-1.8

3.3

45.9

43.7

Minor BPS

55.3

0.16

1.5

61.81

37.9

Associated Gene:

Gene:

PLXNA4

Ensembl Gene ID:

ENSAPLG00000016282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017012

1929223 - 2304766

375544