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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22585530_22586150_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22585530 - 22586150
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAATTCTTAGCT
Flanking Amino Acid:
CDVLEHLIHKGGDVEALADD
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
79
0.72
1
78.4
31.2
Major PPT
73.7
0.53
1
71.7
38.4
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
69.3
0.69
1.5
82.03
39

Associated Gene:

Gene:
ASB15
Ensembl Gene ID:
ENSAPLG00000014812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047525
22582374 - 22594257
11884
ENSAPLT00000015451
22582374 - 22594257
11884