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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22587741_22589479_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22587741 - 22589479
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGTAA
5'SS Class:
major
3'SS Sequence:
TGGATTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTATCCACT
Flanking Amino Acid:
SHQCLPITMTGQVFGLQDLV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
63
40
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
64.3
0.32
1.1
63.6
42
Minor 5ss
40.5
-1.1
3.4
55.4
48.8
Minor BPS
48.1
-0
2.2
75.57
40.9

Associated Gene:

Gene:
ASB15
Ensembl Gene ID:
ENSAPLG00000014812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047525
22582374 - 22594257
11884