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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22587892_22589479_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22587892 - 22589479
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTGGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTTTTGGATA
Flanking Amino Acid:
KPPVSSNYNDSFVPPSEENR
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
63
40
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
76.7
0.6
1
76.5
37.7
Minor 5ss
40.5
-1.1
3.4
55.4
48.8
Minor BPS
61.6
0.36
1.4
73.83
31.4

Associated Gene:

Gene:
ASB15
Ensembl Gene ID:
ENSAPLG00000014812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015451
22582374 - 22594257
11884