About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22589609_22594078_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22589609 - 22594078
Intron Length:
4470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTCAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTATTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
63.4
0.3
1
59.9
40.6
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
65.7
0.49
1.6
75.12
35.5

Associated Gene:

Gene:
ASB15
Ensembl Gene ID:
ENSAPLG00000014812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047525
22582374 - 22594257
11884
ENSAPLT00000015451
22582374 - 22594257
11884