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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22597806_22597914_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22597806 - 22597914
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTCTCTGAGC
Flanking Amino Acid:
GRRCVWWERETTGLVGLAVS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70
0.45
1
66.4
39.4
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
49.9
-0
2
67.09
38.8

Associated Gene:

Gene:
NDUFA5
Ensembl Gene ID:
ENSAPLG00000019976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040846
22597725 - 22602693
4969