Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22621316_22625301_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22621316 - 22625301

Intron Length:

3986

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTCT

5'SS Class:

major

3'SS Sequence:

TTTTCCATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TCTTTCTTACCC

Flanking Amino Acid:

DDTKIVFLVQLQDLQYMIEN

Intron Amino Acid Position:

555

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.1

66.1

40.1

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

88.3

0.86

0.7

86.1

26.6

Minor 5ss

38.4

-1.3

3.5

57.3

46.9

Minor BPS

0.61

1.6

77.35

39.1

Associated Gene:

Gene:

IQUB

Ensembl Gene ID:

ENSAPLG00000014571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018751

22604802 - 22625616

20815

ENSAPLT00000015201

22604802 - 22628199

23398