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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22625488_22628073_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22625488 - 22628073
Intron Length:
2586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTATTTAATG
Flanking Amino Acid:
AHLKLCNLQEAYEAAFIHRI
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.8
81.5
35.8
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
65.1
0.33
1.5
67.86
40.4

Associated Gene:

Gene:
IQUB
Ensembl Gene ID:
ENSAPLG00000014571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015201
22604802 - 22628199
23398