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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22635509_22642792_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22635509 - 22642792
Intron Length:
7284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATAATGTTAAAA
Flanking Amino Acid:
PVPALLWSTARSQWNPEPAL
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
47.5
-0.1
2.1
60.49
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014990
22635324 - 22690707
55384