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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22642920_22643010_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22642920 - 22643010
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACCAATC
Flanking Amino Acid:
RNLVLFLQETLSIDDFTYYS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.4
35.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
42.6
-0.8
2.6
54.6
42.8
Minor BPS
47.3
-0.2
2.1
64.7
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014990
22635324 - 22690707
55384