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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22651787_22653430_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22651787 - 22653430
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
ATATTCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGATTTTTAACT
Flanking Amino Acid:
LLVVQLQPLVSGLSEISTLE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.2
0.66
0.8
74.4
35.5
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
72.7
0.79
1.1
79.64
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014990
22635324 - 22690707
55384