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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22653475_22658533_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22653475 - 22658533
Intron Length:
5059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
GTTTGCTAAATT
Flanking Amino Acid:
ISTLEAMAENDKIIGRLTMD
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.5
0.8
0.7
81
29.9
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
58.9
0.36
2.1
80.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014990
22635324 - 22690707
55384