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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22658620_22679228_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22658620 - 22679228
Intron Length:
20609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GAATTGTTAATG
Flanking Amino Acid:
AIYTAVRPSRISRRTETMWN
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.5
0.55
1
64.9
45.7
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
48.9
-0.2
2.1
53.68
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014990
22635324 - 22690707
55384