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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22679468_22680088_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22679468 - 22680088
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCTTACTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTC
Flanking Amino Acid:
SSSVCSNVNTTLSLKYTKPV
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.3
74.1
38.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
83.1
0.75
0.7
81.3
29.4
Minor 5ss
31
-2.2
2.6
32.5
35
Minor BPS
72.3
0.68
1.5
81.43
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014990
22635324 - 22690707
55384