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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22680143_22685047_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22680143 - 22685047
Intron Length:
4905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTCATTTGAACT
Flanking Amino Acid:
PVNGINSLEIRFIMTNKFYE
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
84
30.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
78.2
0.64
0.9
70
41.4
Minor 5ss
47.4
-0.3
2.7
66.9
44.4
Minor BPS
55.7
0.26
1.5
69.77
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014990
22635324 - 22690707
55384