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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2269551_2271111_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2269551 - 2271111
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCATCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGGTCGTTAACT
Flanking Amino Acid:
FTFLLYKFLKECAGEPLFSL
Intron Amino Acid Position:
1450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.3
0.59
0.8
69.6
31.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
68.1
0.65
2.1
84.68
41.9

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544