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Intron Name: Anas_platyrhynchos_platyrhynchos_1_2271259_2276328_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2271259 - 2276328

Intron Length:

5070

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GCCTCTTTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTGCTGTGAAAT

Flanking Amino Acid:

IRQQIDYKTLVLSCVNPDNV

Intron Amino Acid Position:

1499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

76.7

31.8

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

0.63

0.8

75.7

32.8

Minor 5ss

-2.3

3.2

38.4

40.8

Minor BPS

45.6

-0.2

2.2

67.25

43.2

Associated Gene:

Gene:

PLXNA4

Ensembl Gene ID:

ENSAPLG00000016282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017012

1929223 - 2304766

375544