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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22720570_22723014_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22720570 - 22723014
Intron Length:
2445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTGTATTC
Flanking Amino Acid:
LPLPLIIKTKEAECAYTLFV
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
0.9
67.5
43
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
46.5
-0.2
2.1
61.83
38.6

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167