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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22724016_22726969_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22724016 - 22726969
Intron Length:
2954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTCTCTTCCATT
Flanking Amino Acid:
MVMLVGVNPAWLTLGFMVSC
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.2
35.6
Major BPS
65
0.37
1.3
76.1
38
Major PPT
82.7
0.74
0.8
74.1
35.3
Minor 5ss
41.6
-0.9
3.1
55.7
43.9
Minor BPS
52.8
0.17
2
75.4
42.3

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167